Index

_

_asdict() (snakescale.utils.ProcessReturn method)

_make() (snakescale.utils.ProcessReturn class method) _replace() (snakescale.utils.ProcessReturn method)

A

available_subtools() (in module snakescale)

available_tools() (in module snakescale)

C

call_snakemake() (in module snakescale.utils) clean_picard_style_key() (in module snakescale.formatters)

clean_picard_style_value() (in module snakescale.formatters) collect_jvm_resources() (in module snakescale.resources) collect_picard_style_jvm_resources() (in module snakescale.resources)

E

exit_code (snakescale.utils.ProcessReturn attribute)

ExitCode (class in snakescale.utils)

F

format_bedtools_params() (in module snakescale.formatters) format_bwa_params() (in module snakescale.formatters) format_dwgsim_params() (in module snakescale.formatters)

format_fgbio_params() (in module snakescale.formatters) format_kraken_params() (in module snakescale.formatters) format_picard_params() (in module snakescale.formatters)

I

is_ok() (snakescale.utils.ExitCode method)

P

ProcessReturn (class in snakescale.utils)

R

run_tool_test() (in module snakescale.testing)

S

scale() (in module snakescale) snakecase_to_kebab_case() (in module snakescale.formatters) snakescale (module) snakescale.formatters (module)

snakescale.resources (module) snakescale.testing (module) snakescale.utils (module) stderr (snakescale.utils.ProcessReturn attribute) stdout (snakescale.utils.ProcessReturn attribute)